rs33289192 SNP Detail

Summary

• ID
  rs33289192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102489261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCACTCCCGG TCTTCCCCAT CCCGCTCGGT GCCGGCCACT CCTGGTACCG
  K
  TCTGCCCCGC GGCGAAGCAC ACAGACACGC ACACACACAG GTGGCTGCTG           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45260260	mCV23733499	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss320439898	CHEV_2_102499073	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33289192					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102489261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	784 bp upstream
Rr561713	regulatory region 561713	247 bp distal
Rr561714	regulatory region 561714	104 bp distal
Rr561715	regulatory region 561715	within coordinates
Rr561716	regulatory region 561716	376 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	677 bp downstream
Tssr19099	transcription start site region 19099	605 bp downstream
Tssr19100	transcription start site region 19100	336 bp downstream
Tssr19101	transcription start site region 19101	247 bp downstream
Tssr19102	transcription start site region 19102	221 bp downstream
Tssr19103	transcription start site region 19103	174 bp downstream
Tssr19104	transcription start site region 19104	152 bp downstream
Tssr19105	transcription start site region 19105	82 bp downstream
Tssr19106	transcription start site region 19106	64 bp downstream
Tssr19107	transcription start site region 19107	44 bp downstream
Tssr19108	transcription start site region 19108	8 bp downstream
Tssr19109	transcription start site region 19109	17 bp upstream
Tssr19110	transcription start site region 19110	297 bp upstream