rs33290476 SNP Detail

Summary

• ID
  rs33290476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAGAGGG CCTCCTGGCC TAAGCTCTCC AGAGCTAACT
  AGGATGACAG GTACTGCTCC TGACTTTGTT ATGTATGAGT ACTGAAGCTA GAACTCAGGC
  Y
  TGCATGACAA GTACTTTACC TACTGAGAAA TCTCTCTAGT CCCCCCAACT AAATTTTAAC
  AATTTATAGT CAAAATGGGT ATGGTGGTAT ACACCTGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39518135	mCV24098826	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss325366945	CHEV_17_33775984	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33290476					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858013 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	454 bp upstream
Tssr143785	transcription start site region 143785	1227 bp downstream
Tssr143786	transcription start site region 143786	1209 bp downstream
Tssr143787	transcription start site region 143787	929 bp downstream
Tssr143788	transcription start site region 143788	916 bp downstream
Tssr143789	transcription start site region 143789	898 bp downstream
Tssr147440	transcription start site region 147440	872 bp downstream