rs33291555 SNP Detail

Summary

• ID
  rs33291555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85433929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG CCCAGTCACC CTGCAGGGGG
  K
  CTGGCGTGCT CGCGTTCCCC TCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46257368	mCV24193645	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss145392373	ENSMUSSNP528909	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322751407	CHEV_8_87231199	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33291555					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85433929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20709	CpG island 20709	1350 bp distal
Cpgi20710	CpG island 20710	97 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1672 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	1471 bp proximal
Tssr78440	transcription start site region 78440	1325 bp upstream
Tssr82121	transcription start site region 82121	1473 bp upstream
Tssr82122	transcription start site region 82122	1240 bp upstream
Tssr82123	transcription start site region 82123	1091 bp upstream
Tssr82124	transcription start site region 82124	1046 bp upstream
Tssr82125	transcription start site region 82125	972 bp upstream
Tssr82126	transcription start site region 82126	784 bp upstream
Tssr82127	transcription start site region 82127	1205 bp downstream