rs33291777 SNP Detail

Summary

• ID
  rs33291777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110291094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTAAAA CTCTGCGTTC
  AAACAAGCTC CCAAGCAGTG CTGATGCTCT GGGTCCAATG ACAACAATGT AAAGGTATCT
  TCTAGTGAAG GTGCAGTAGA AGAGGGAGTG ACTAATTACA CCAGAAGAAA AGTGAGACTC
  ACAGAGACTC AACTTTACAC AATTACCCAC TATGCTAGGA CAGGGCAGAA GAAAGAAAAC
  W
  CGGGTCATTT CCAAACAGAA ACACATGGGT CGGCAGGGAG AGAGGTGTGT GAACCTGTAA
  CTACAACATT AAACGCAAAT GCCCAGTGTT CTAGGACCCC AGTGGCTGCA CACACCTGTG
  ATCACACCTG GGAGAAGGTA GCAGATCAAG AGTTCAGGGT CATCTGTGAC ATCACCAGTT
  TGAGACCAGC CAGGAGATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47779811	NES11987936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33291777					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47779811	NES11987936	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110291094 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	within coordinates
Rr687118	regulatory region 687118	592 bp distal
Tssr91625	transcription start site region 91625	939 bp upstream
Tssr91626	transcription start site region 91626	396 bp downstream
Tssr91627	transcription start site region 91627	410 bp downstream