rs33293387 SNP Detail

Summary

• ID
  rs33293387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110465541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCGCGC ACCATGCCTC
  ACCTTGCGCA GGAGAGCCCC TATGATGGCA GGACCCTGGC ACTGCACCAG GCTCTCCTGA
  TTCACGGTGT GGTTCTGCAG GAAGTTCCGA AGCATCAGGA GAAAGGCAGC CACTGCGTTC
  CTCTCCATCC GGTCCTCTGC GGCCACCAGG AAGAGGGCAG AGGTTGGTCA AGGGTGTGCC
  R
  GAAGCCACTA CCTCAAGCAC AATCCCAAGC ACCATACCAA GACTTTCTCC CCACCCCCAC
  CCCGAGTCCA GGAGTGAAGG TCACTCACCT GAGGACTTGC CCAGGGGGAG AAGCAGGCCC
  TGAGTGTTGC GGCCTGAGGT CAGCTCAGGT CCTACGAGGT CGTGTGTTTC ACACGGGCCG
  GCCTCGGCCT CCTGGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47780471	NES11982433	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33293387					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47780471	NES11982433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110465541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22384	CpG island 22384	907 bp distal
Mir8107	microRNA 8107	358 bp upstream
Nbeal2	neurobeachin-like 2	within coordinates
Rr192758	regulatory region 192758	541 bp distal
Rr198752	regulatory region 198752	860 bp proximal
Rr202597	regulatory region 202597	within coordinates