rs33293388 SNP Detail

Summary

• ID
  rs33293388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110465878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCAGCTC AGGTCCTACG
  AGGTCGTGTG TTTCACACGG GCCGGCCTCG GCCTCCTGGG GCTGCACAGC CACTCGCTCC
  AGCAAGGGCA GCAGAACACC CATGCCCCCT ACGCAGTTCA CCACATCCTG GGACAGGGGG
  CCAGTGGTGA ATGAGAGGAC AGTTCCCAAC CAGCGTCTCG CCTTAAGCCT GGACTCTCTC
  R
  AACTGGTCTC CCAAACCCTG CCAGGGCCCA GCACTGCTCC CGACACTCCC TGTGTACACT
  ATACACATAG ATGCACGTAC CTTCACGTCC CATGTCTCCA CCCTATGTCC TGTCAGACGG
  CCATCCAGCC CATGGCCAGG GGACAGGTCC AGACAGATAT TGTTCTTACA GGCCTGGATC
  AAATGGAGAA GGGAGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47780473	NES11982434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33293388					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47780473	NES11982434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110465878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22384	CpG island 22384	1244 bp distal
Mir8107	microRNA 8107	695 bp upstream
Nbeal2	neurobeachin-like 2	within coordinates
Rr192758	regulatory region 192758	878 bp distal
Rr198752	regulatory region 198752	523 bp proximal
Rr198753	regulatory region 198753	1922 bp proximal
Rr202597	regulatory region 202597	313 bp distal