rs33294156 SNP Detail

Summary

• ID
  rs33294156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44292199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTTGC TGTTCTTGCT
  ATGACACTGT CTAAACTTTT GCAGTTAATT TGGAAATGTT AAGCCCCAAC TACAGAAGTA
  AAGCGTTGCC TAGTTATTAA CCCTCTGTTC ACCTGCTTCT TGCGCAGCCC AACTCTGAAA
  ATTCTTTGTA GTCTGAATTT CCATACAGAC AAGACGGAGA ATTACAAAAG AAGATTCACA
  Y
  TAAGTAGGAA AACATTAACT TAAACCTGAC TTTTAAATGG CAAAAATGCG CTCAAAAGTT
  AACCTTGCTT TTTTTTTTTT TCCCCTACAC CTATTTTGGC ATTGGTTGTC TGTTTTTTAT
  TGAAAATGAA GAATTTCTCA AAGACTAGTT TGAAATTCGT TTTCTTACTT ACCCTTCAGA
  AATAAGGATA TGAAATCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49467395	NES12601090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33294156					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49467395	NES12601090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44292199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	205 bp distal
Eny2	ENY2 transcription and export complex 2 subunit	within coordinates
Nudcd1	NudC domain containing 1	496 bp upstream
Rr311712	regulatory region 311712	within coordinates
Rr404372	regulatory region 404372	714 bp downstream
Tssr131224	transcription start site region 131224	1390 bp downstream
Tssr131225	transcription start site region 131225	629 bp downstream
Tssr134195	transcription start site region 134195	990 bp upstream
Tssr134196	transcription start site region 134196	891 bp upstream
Tssr134197	transcription start site region 134197	466 bp upstream