rs33294158 SNP Detail

Summary

• ID
  rs33294158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44291347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGGGAAA CGGCGTGGTT CCCATCCCAG ACGACTCTGC
  GGCGCCACGT CTCTTCTGGG AAGTGTAGTG TCCATGAGAA ATTTGGTTCT GTTGCAATGC
  Y
  GGGAAATGTA GTTTTTTGAT CCCTGAACCC ACGTCAGCTA ACAGACTCTG GACTTCCTTA
  CCCAGAGGGC CGAGCGACCA GAAGGCGGCC CGCGCTAGTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49467397	NES12601165	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33294158					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49467397	NES12601165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44291347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	within coordinates
Eny2	ENY2 transcription and export complex 2 subunit	141 bp upstream
Nudcd1	NudC domain containing 1	within coordinates
Rr311712	regulatory region 311712	within coordinates
Rr404372	regulatory region 404372	within coordinates
Tssr131224	transcription start site region 131224	538 bp downstream
Tssr131225	transcription start site region 131225	122 bp upstream
Tssr134195	transcription start site region 134195	138 bp upstream
Tssr134196	transcription start site region 134196	39 bp upstream
Tssr134197	transcription start site region 134197	352 bp downstream