rs33295017 SNP Detail

Summary

• ID
  rs33295017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24601018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTGAAAG CATAGAAGAG ACCAAAGTCT AATTTTTCTC
  TTTTTCTCCT AGTAATTTAT TTTTTATGTA CAGTGGTGTT TTGCCTGCAC GTATGTCTGT
  R
  TGAGGATGTC AGATACCCTG GAACTGGAGT TACAGACAGT TGTGAACTGC CATGTGGATG
  CTGGGAATTG AACCCTGGTG CTCTGGAAGA GCAGGCAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45761589	mCV25442784	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss148093045	ENSMUSSNP4530888	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321495669	CHEV_5_23901838	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33295017					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24601018 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	1264 bp distal
Rr112284	regulatory region 112284	183 bp proximal
Rr112285	regulatory region 112285	1383 bp proximal
Rr124925	regulatory region 124925	617 bp distal
Rr398999	regulatory region 398999	1550 bp downstream
Tssr45412	transcription start site region 45412	1590 bp downstream