rs33295245 SNP Detail

Summary

• ID
  rs33295245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3676033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT ACCCGACCAC CTGTGAAACT
  R
  CCGGATGCTC CTGTTTATCT GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46258615	mCV22852524	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss61076607	NES16054577	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	A	A	G	G	G
ss148547074	ENSMUSSNP6134852	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33295245					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076607	NES16054577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3676033 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	488 bp upstream
Pet100	PET100 homolog	1798 bp downstream
Tssr80204	transcription start site region 80204	1456 bp upstream
Tssr80205	transcription start site region 80205	1366 bp upstream
Tssr80206	transcription start site region 80206	1107 bp upstream
Tssr80207	transcription start site region 80207	1050 bp upstream
Tssr80208	transcription start site region 80208	1019 bp upstream
Tssr80209	transcription start site region 80209	991 bp upstream
Tssr80210	transcription start site region 80210	821 bp upstream
Tssr80211	transcription start site region 80211	780 bp upstream
Tssr80212	transcription start site region 80212	745 bp upstream
Tssr80213	transcription start site region 80213	736 bp upstream
Tssr80214	transcription start site region 80214	485 bp upstream
Tssr80215	transcription start site region 80215	453 bp upstream