rs33296338 SNP Detail

Summary

• ID
  rs33296338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110468656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTGAA AAGTAGTGTG
  GAAGCAAGCA AAGCTATGGG TGCTGTGGGC AACTTGCACT CCCTTCGGCT GCGGAACACC
  TTCGCTAGTT CTGCCTTAGG TCACAGTGCA GAAAGAACAA GGACAACAGA GGATGCAGTG
  GCCTGTATCC ATCTCAGAAG GCTACAGATG GTGGTCAGCT CACAAGTGTC CTTTCTCTAC
  R
  TGGCCGGGAC CCAGGACACC CAACTCCCAG AATACACTGA TGACCACACC CACCAAGCCT
  ATCGAACCAC ACCCCAGCGA CAATGGCCCT CACATGCTCT CCAGGGAACA AGAGTGACAG
  GCCAGTTTTG GAAACATGAG GACAATGACC TCCACCTCTG ACTCCTATCA CAGAAAGTGA
  AGCATCCTCA CCTTGGCCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47780507	NES11982455	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33296338					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47780507	NES11982455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110468656 () rs orientation: forward

Symbol	Name	Function Class
Nbeal2	neurobeachin-like 2	within coordinates
Rr198752	regulatory region 198752	1456 bp distal
Rr198753	regulatory region 198753	655 bp distal
Rr198754	regulatory region 198754	545 bp proximal