rs33296342 SNP Detail

Summary

• ID
  rs33296342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110468719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGCTGCG GAACACCTTC
  GCTAGTTCTG CCTTAGGTCA CAGTGCAGAA AGAACAAGGA CAACAGAGGA TGCAGTGGCC
  TGTATCCATC TCAGAAGGCT ACAGATGGTG GTCAGCTCAC AAGTGTCCTT TCTCTACATG
  GCCGGGACCC AGGACACCCA ACTCCCAGAA TACACTGATG ACCACACCCA CCAAGCCTAT
  Y
  GAACCACACC CCAGCGACAA TGGCCCTCAC ATGCTCTCCA GGGAACAAGA GTGACAGGCC
  AGTTTTGGAA ACATGAGGAC AATGACCTCC ACCTCTGACT CCTATCACAG AAAGTGAAGC
  ATCCTCACCT TGGCCGAAGG GGAGCCACTC ATGATGCAGG TCAGCACTCT GACCACGTGC
  ACTGCGATGG CATCGGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47780511	NES11982460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33296342					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47780511	NES11982460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110468719 () rs orientation: forward

Symbol	Name	Function Class
Nbeal2	neurobeachin-like 2	within coordinates
Rr198752	regulatory region 198752	1519 bp distal
Rr198753	regulatory region 198753	718 bp distal
Rr198754	regulatory region 198754	482 bp proximal