rs33296394 SNP Detail

Summary

• ID
  rs33296394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4266099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCAAAA GGTTCCAAAT
  TGCTAACCCT TGCTTGGGGA ATTAGGGAGT TGGGGGAATT AACTTATTAC CTGGCAATCC
  CACTGCTGGC ACGCCCGGGG CTAGAAATAG AGCCCTGGCC AGGGGTCTTC ATAGGGGCCC
  TCTCTCCTTT CCCAGAAGCT GGGGGCCTGT TGGCTTCAGG GAGAAGACAA AAATCAGTGG
  Y
  ACTTCTGAAA AAGAGGAGTA TCTAAGAAGG AAGAGAGAAG GTAAGCAGAG TGCAGATGGA
  GGTCACAAAT AAAGCTGAGT ACCTGGGCTA CGAGGACCTG CCCCAGCACT GCGCGCTGGT
  GCCCCGTGAA TAGTGGTCTG TGGAAGAGCT GCTTTGCTGG TCTGTGGAAG AGCTGCTTTG
  CTGGTCTGTG GAAGAGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46258341	mCV23159908	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						T
ss61075549	NES16047926	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	T	T	T	C	T
ss148555637	ENSMUSSNP4104680	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33296394					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075549	NES16047926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4266099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20044	CpG island 20044	1871 bp distal
Cpgi20045	CpG island 20045	1144 bp distal
Cpgi20046	CpG island 20046	256 bp proximal
Gm64374	predicted gene, 64374	561 bp downstream
Prr36	proline rich 36	within coordinates
Rr658993	regulatory region 658993	1203 bp proximal
Tssr80246	transcription start site region 80246	1971 bp upstream
Tssr80247	transcription start site region 80247	1796 bp upstream
Tssr80248	transcription start site region 80248	1742 bp upstream
Tssr80249	transcription start site region 80249	1719 bp upstream
Tssr80250	transcription start site region 80250	1614 bp upstream
Tssr80251	transcription start site region 80251	1516 bp upstream
Tssr80252	transcription start site region 80252	1475 bp upstream
Tssr80253	transcription start site region 80253	1369 bp upstream
Tssr80254	transcription start site region 80254	1309 bp upstream
Tssr80255	transcription start site region 80255	88 bp upstream
Tssr80256	transcription start site region 80256	880 bp downstream
Tssr80257	transcription start site region 80257	919 bp downstream
Tssr80258	transcription start site region 80258	1014 bp downstream
Tssr80259	transcription start site region 80259	1034 bp downstream
Tssr80260	transcription start site region 80260	1080 bp downstream
Tssr80261	transcription start site region 80261	1162 bp downstream
Tssr80262	transcription start site region 80262	1367 bp downstream