rs33296545 SNP Detail

Summary

• ID
  rs33296545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93283443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA AGCTATGGCA AGCCTCGTCT
  M
  AGCCTCAGGA AGCAGGGGTC CAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261703	mCV23857803	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss146943791	ENSMUSSNP2606562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss320395935	CHEV_2_93293255	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33296545					SNP	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93283443 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561200	regulatory region 561200	430 bp distal
Rr561201	regulatory region 561201	267 bp distal
Rr561202	regulatory region 561202	within coordinates
Rr561203	regulatory region 561203	1865 bp proximal
Rr561204	regulatory region 561204	1899 bp proximal
Tssr18992	transcription start site region 18992	265 bp downstream
Tssr18993	transcription start site region 18993	331 bp upstream
Tssr18994	transcription start site region 18994	371 bp upstream
Tssr18995	transcription start site region 18995	1565 bp upstream
Tssr25289	transcription start site region 25289	411 bp upstream
Tssr25290	transcription start site region 25290	47 bp downstream