rs33296665 SNP Detail

Summary

• ID
  rs33296665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128814305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGGAGA AACTGGCCCT
  CTAGTTTGGG AACATGGCTT CTTCCTAGAT AGGAATTTGA GGGCCCCAGA TGTGATGGGC
  TGGAGTGGGG AGCCTTTGAA ATGGTAGATG ATTGGCACCG TGAATTATTA CCATCTTTTA
  TGGTCCTCTC ACTGCAAGAT CTGATGCTAG CCAGAGCAGT ATGCAGCCCC CTCTTGCTGC
  R
  GAACTGTGGC CCACAACAGG GAGTTAGCAT CTTTACTATT CTTAAGAACT TCATGCAATA
  GCTTTTTTGT TGTTGTTGTT TTGTTTTGCT AGCTGGAACA AGTTTTTGTC TCTAACCTAG
  TGTCTAACCT AGCTGCCTTG CTGGGCGAAT GGGATCTGTA TCTTAAGCTC TTCTCACTGG
  GCTAGGTGTG TGGCTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45762086	mCV23759935	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss149244957	ENSMUSSNP4136095	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss321688016	CHEV_5_129243116	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33296665					SNP	G	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128814305 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1212 bp upstream
Cpgi16665	CpG island 16665	839 bp distal
Gm71554	predicted gene, 71554	1180 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	1080 bp downstream
Tssr48983	transcription start site region 48983	1148 bp downstream
Tssr48984	transcription start site region 48984	1109 bp downstream
Tssr48985	transcription start site region 48985	1054 bp downstream
Tssr48986	transcription start site region 48986	994 bp downstream
Tssr53471	transcription start site region 53471	1223 bp upstream