rs33296670 SNP Detail

Summary

• ID
  rs33296670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTATC ACTCATAAAT
  TATTTAAAAT ATTTACTAAA GTGTGAAGCT TTTGTAGATT AAGATATAGT TGTTTTTGAA
  ATGCTGATAA AGCCAAGCTT GGTGGTGCAT GCCTTTAATC CCAGCATTAG GGAGGCAGAG
  GCAGGCAGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC AGGATAGCCA
  R
  GGCTATACAG AGAAACCCTG TCTCAAAAAA CAAAAACAAA AACAAACAAA CAAACAAAAA
  GAAATGCTGA TAAGAGCATT ACATGTGGTT ATTATTATGC AAAATAACAT AAAACTCTGT
  GACATTTTAA GCAGCCAGTT TTTATTTCTT CATACTAATT TCTAGAATTC AAATGTTCAC
  TGTTGAACCA AATTAGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45762093	mCV23268459	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147966713	ENSMUSSNP3653263	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33296670					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000931 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	458 bp upstream
Tssr50147	transcription start site region 50147	351 bp upstream
Tssr50148	transcription start site region 50148	325 bp upstream
Tssr50149	transcription start site region 50149	277 bp upstream
Tssr50150	transcription start site region 50150	251 bp upstream
Tssr50151	transcription start site region 50151	232 bp upstream
Tssr50152	transcription start site region 50152	1054 bp downstream
Tssr50153	transcription start site region 50153	1081 bp downstream
Tssr50154	transcription start site region 50154	1138 bp downstream