rs33297810 SNP Detail

Summary

• ID
  rs33297810
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:6413069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGACCA ATCTAAAGTG
  GGTGCTGGGA ACCAATTCTG TAAGACTAAC GAACACTCTC AACCACTGAC CTTATCTCCA
  CCCTCTCCCC ATTGATTAGC TTTTACTGTT CCTGATGTTC ATGTCATATC ATATAGACTC
  ATATAATATA CCGAGTCTCT TTCATTTAAC ACAATATGAT GTTTCTGAGA TTCATGTGTT
  S
  TATAGATATA TACTATACTA CTTTGTGTAT ATATTGGATA TGGGGGCTTC TAGAGTGGTT
  GTATAGTTGT GTACTCCTGC TAGCAATGTA AAGAGTTCAA GTTGCTTTTT ATTCCTTTCA
  GTAGCTAGTA TTTTGAGTCT TTTATTTATT TTTTTGTCAT TCTAGAAGGT TTACGGTGAT
  ATTTTTCTGC GATTTAAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss46796751	NES10998788	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C		C	G
ss134083006	ENSMUSSNP527247	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs33297810					SNP	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46796751	NES10998788	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:6413069 () rs orientation: forward

Symbol	Name	Function Class
5430428K19Rik	RIKEN cDNA 5430428K19 gene	within coordinates
DXMit203	DNA Segment, Chr X Massachusetts Institute of Technology 203	1896 bp proximal
Shroom4	shroom family member 4	Intron