rs33297813 SNP Detail

Summary

• ID
  rs33297813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:6414041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAAAAA CCTCTCTCAT
  AAACAAATGG CTTGGGTTGA TAAAGTGCAC CCCTGCTAAG AGTGGAAGAG ACCTTCCATT
  CATTCTGATG CAGTATGGAG GGAGTAGAAC CATCTTCTTT GACAGAAACA AACCCAGTCT
  TACTTTTGGT TGCTGAGTAA GCCACCACAT TTAAATGCCT TGCCCTCATT CTTATCAACA
  M
  ATTCCTAGAG CTGAGCTTGG CTCTGGGCTC ACTGAGGTTT TGGCATGGAT GCTCAGATTT
  TGACTTGGCC TAGTCCCTGG AGAAATGGAA TGACTCAAAG CTTTAAATCC CTTTGTTATG
  AGGCTTTGTA AACTAGATGG TGATTAAGCA CTTGGGGAAG ATGGTGTCTG TAGGGATAGA
  TGACACTATG GGCCACATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46796754	NES10998744	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33297813					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46796754	NES10998744	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:6414041 () rs orientation: forward

Symbol	Name	Function Class
5430428K19Rik	RIKEN cDNA 5430428K19 gene	within coordinates
DXMit203	DNA Segment, Chr X Massachusetts Institute of Technology 203	924 bp proximal
Shroom4	shroom family member 4	within coordinates