rs33298706 SNP Detail

Summary

• ID
  rs33298706
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:6414110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTCCAT TCATTCTGAT
  GCAGTATGGA GGGAGTAGAA CCATCTTCTT TGACAGAAAC AAACCCAGTC TTACTTTTGG
  TTGCTGAGTA AGCCACCACA TTTAAATGCC TTGCCCTCAT TCTTATCAAC ACATTCCTAG
  AGCTGAGCTT GGCTCTGGGC TCACTGAGGT TTTGGCATGG ATGCTCAGAT TTTGACTTGG
  S
  CTAGTCCCTG GAGAAATGGA ATGACTCAAA GCTTTAAATC CCTTTGTTAT GAGGCTTTGT
  AAACTAGATG GTGATTAAGC ACTTGGGGAA GATGGTGTCT GTAGGGATAG ATGACACTAT
  GGGCCACATC AGAATTCTAT TTACTCACGA TCAGGGGATT CCTTGGGACA GATCCACAGG
  ACAGCTCCTT GTAGGATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46796757	NES10998745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33298706					SNP	C	C	C	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46796757	NES10998745	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:6414110 () rs orientation: forward

Symbol	Name	Function Class
5430428K19Rik	RIKEN cDNA 5430428K19 gene	within coordinates
DXMit203	DNA Segment, Chr X Massachusetts Institute of Technology 203	855 bp proximal
Shroom4	shroom family member 4	within coordinates