rs33298848 SNP Detail

Summary

• ID
  rs33298848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC CCATCCCCCA CCCCAGGAGA
  Y
  AGGATCGCAC TGCACTTCCC GGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45762289	mCV23796448	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss149148138	ENSMUSSNP5057417	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321658430	CHEV_5_117544811	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33298848					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232867 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	41 bp distal
Rr618555	regulatory region 618555	178 bp distal
Rr618556	regulatory region 618556	1595 bp proximal
Rr618557	regulatory region 618557	1960 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron