rs33298947 SNP Detail

Summary

• ID
  rs33298947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115286840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TCTCTTCTGA GTTCTGAGAA
  Y
  ACTACACATG TGGTGAATAC ACAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45761823	mCV23012844	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss149121430	ENSMUSSNP5634842	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321654349	CHEV_5_115598790	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33298947					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115286840 () rs orientation: forward

Symbol	Name	Function Class
Mlec	malectin	within coordinates
Rr618146	regulatory region 618146	1063 bp distal
Rr618147	regulatory region 618147	409 bp proximal
Tssr48205	transcription start site region 48205	1058 bp downstream
Tssr52756	transcription start site region 52756	894 bp upstream
Tssr52757	transcription start site region 52757	742 bp upstream
Tssr52758	transcription start site region 52758	707 bp upstream