rs33298979 SNP Detail

Summary

• ID
  rs33298979
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110656333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGACAGGG GCGGCTTCCT
  AGCCCTCCTG GTCTGGCTTC AGCTTCTTCA GCCTTTGTTC AGTGAGGCCT TAGCTGGGGA
  CAGGGGTCCT GGTGGGAGCA GTGGGGGAGG TGTGGCTTCA TGGAACTTGG CTTGGGCGAG
  AGTGGCCATG GTGATGGTGT TGGCGTTGGT GACAGTGCTG GTGCCGTAGG GGCAGTCGGC
  M
  CAGGAGCCAG CAGCTGCACC CGCACTCAAG CTGAGCTTTT CCTGTTGGCT TCTTCCTCAG
  GTGGTACTTA CAAACCCAGG GAAGATTCCG GAGTGATGCA CCGGCCCCAG AGGCCCCGGA
  GACCCCGGAG TGACCCAGAG GCCCCGGCAC AGCAGAGTCG CTTGAAATCC CTGAGTATTT
  CGCACCCTTC AGGAGTTCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47781139	NES11999304	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33298979					SNP	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781139	NES11999304	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110656333 () rs orientation: forward

Symbol	Name	Function Class
Prss43	serine protease 43	within coordinates
Rr207397	regulatory region 207397	734 bp distal
Rr207398	regulatory region 207398	within coordinates
Tssr87415	transcription start site region 87415	243 bp downstream