rs33299288 SNP Detail

Summary

• ID
  rs33299288
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71062932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC CAAACACAGC TAGGAAAGTC
  S
  GGGGAGTGGA GCTTGCAGGA CACAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46258570	mCV22785586	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	G
ss145127937	ENSMUSSNP4050599	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		G
ss322700620	CHEV_8_73134181	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33299288					SNP	G	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71062932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	1515 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	630 bp proximal
Gm45546	predicted gene 45546	143 bp upstream
Gm63790	predicted gene, 63790	111 bp upstream
Rr400904	regulatory region 400904	562 bp upstream
Rr400905	regulatory region 400905	1601 bp upstream
Rr664832	regulatory region 664832	1979 bp distal
Rr664833	regulatory region 664833	1478 bp distal
Rr664834	regulatory region 664834	1830 bp distal
Rr664835	regulatory region 664835	920 bp distal
Rr664836	regulatory region 664836	within coordinates
Rr664837	regulatory region 664837	122 bp proximal
Rr664838	regulatory region 664838	647 bp proximal
Rr664839	regulatory region 664839	1327 bp proximal
Rr664840	regulatory region 664840	1857 bp proximal
Ssbp4	single stranded DNA binding protein 4	1848 bp upstream
Tssr77777	transcription start site region 77777	108 bp upstream
Tssr77778	transcription start site region 77778	417 bp upstream
Tssr81636	transcription start site region 81636	1952 bp upstream