rs33299694 SNP Detail

Summary

• ID
  rs33299694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24305066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CAGACAGGGT TTCTCTCAGT
  R
  GTCCACCACT CTCTGCCTCC ACCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45762685	mCV23237172	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148083552	ENSMUSSNP482764	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321493903	CHEV_5_23605886	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33299694					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24305066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	297 bp proximal
Gm71592	predicted gene, 71592	within coordinates
Klhl7	kelch-like 7	537 bp upstream
Rr398996	regulatory region 398996	363 bp upstream
Rr608239	regulatory region 608239	within coordinates
Rr608240	regulatory region 608240	413 bp proximal
Rr608241	regulatory region 608241	566 bp proximal
Rr608242	regulatory region 608242	1622 bp proximal
Tssr45399	transcription start site region 45399	510 bp upstream
Tssr45400	transcription start site region 45400	627 bp upstream
Tssr50303	transcription start site region 50303	399 bp downstream