rs33299950 SNP Detail

Summary

• ID
  rs33299950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164752214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC AGCCTAGCAC CCATAGAACC
  S
  GGCCCTCCCG TTCCATTTGA CAGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261452	mCV23132983	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss148232894	ENSMUSSNP78776	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
ss320607080	CHEV_2_164735794	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33299950					SNP	C	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164752214 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	1596 bp upstream
Cpgi12677	CpG island 12677	200 bp proximal
Rr367365	regulatory region 367365	218 bp upstream
Rr569758	regulatory region 569758	628 bp distal
Rr569759	regulatory region 569759	520 bp distal
Rr569760	regulatory region 569760	178 bp distal
Rr569761	regulatory region 569761	600 bp proximal
Rr569762	regulatory region 569762	1034 bp proximal
Rr569763	regulatory region 569763	1101 bp proximal
Rr569764	regulatory region 569764	1415 bp proximal
Rr569765	regulatory region 569765	1453 bp proximal
Rr569766	regulatory region 569766	1603 bp proximal
Tssr21686	transcription start site region 21686	1133 bp upstream
Tssr27593	transcription start site region 27593	881 bp downstream
Tssr27594	transcription start site region 27594	924 bp downstream
Tssr27595	transcription start site region 27595	964 bp downstream
Tssr27596	transcription start site region 27596	1266 bp downstream
Tssr27597	transcription start site region 27597	1292 bp downstream
Zfp335	zinc finger protein 335	Intron
Zfp335os	zinc finger protein 335, opposite strand	1139 bp upstream