rs33300994 SNP Detail

Summary

• ID
  rs33300994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84444262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGAAA AGGCTAGTCT
  GCAGACGCTT CTTGGCAGAG TAACTGTCTG GGAGTTAGGC AGGCGATGGT TGTGGGCAGC
  AGGCTACTTT GTGGTTTGGG GGATGGAGTT CAGGGTTTTC TCACATGCTA GGCATTTATT
  GGTGAGCCAC ACCCCAGGCC CAGGGGTTTT TTAAATTTAC TGATTTTGTT TTATAGAAGT
  R
  TTTTGTCTGA ATGCATTTAT ATTCAGAGTG CATGTTTGGT CGGAAGGTCA GAAGAGGACA
  TTGGGTCTCT TTGGAACCGG GGTTATAGAC AGTTGTCGAC CTTCATGTGG ATGTTGGGAA
  TTGAACCTGT GCTCTGAAAG AAAGATCATG TGATCATGTA CTTTTAATCA ATTAGCCATT
  TCTCTAGTTC ATCCAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46259429	mCV23003963	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145360692	ENSMUSSNP903654	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33300994					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84444262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			1685 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666293	regulatory region 666293			1310 bp distal
Rr666294	regulatory region 666294			512 bp distal