rs33301066 SNP Detail

Summary

• ID
  rs33301066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163836214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGTCTC GCCCAGGGAA
  CTATTAAGTC GGAGCCATCA GCGATGGGTT TCAAAGCAGC GGACACAGAA TGACATTGAA
  AAGATCATTT GGTACTTGAT GGGGGCAGGG CTGGAGAGTC AAGCGGTGAA TTTGAAGTCT
  GTCATTAAGC TAAGTGAGGG TAAAAGGAGA AATGACAAAG GCCTATTACT TTGTTCTTTC
  W
  CTAAAAACTG TAAGCTTCAA GACGCAAGTC TTGCTGTACT CCCCAGCACT CTGAAAATTG
  CCACACGGAA TTTGTGGGAA ATGAACGAAG GCGTGGTGGT GGAGGTATTT TGAAGGGCTA
  GACTTAAGGG TCAACAGGCT TGAGTGAAGT AGTAATAAAA TTTAGGTAAC ACTGAAAGCC
  GTTTGGGGAT CCCAGGGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261559	mCV22800593	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss148218304	ENSMUSSNP1475906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320604715	CHEV_2_163820030	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33301066					SNP	A	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163836214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12645	CpG island 12645	389 bp proximal
Rr56027	regulatory region 56027	within coordinates
Rr397469	regulatory region 397469	634 bp upstream
Tssr21496	transcription start site region 21496	844 bp upstream
Tssr21497	transcription start site region 21497	856 bp upstream
Tssr21498	transcription start site region 21498	941 bp upstream
Tssr21499	transcription start site region 21499	977 bp upstream
Ywhab	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	868 bp upstream