rs33301839 SNP Detail

Summary

• ID
  rs33301839
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110723883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTACAGG TGAGCCTGTG ATGTCACAGG CTGATGACCA
  CAGCCTAGGG ACTGGCCCAG GATAGCCCTT TCCAAGGCTT GGCTCTGTCC GATGCCTCTG
  M
  CTCAAGTCTT GTTTGGTACA GGATCAGAGC TTGGTCAGTG TGCCAACGGT GGCCAGAGGT
  ATCAGAGATG ACAGCAAGAG CTTCCGATAG CTCCTGGCCA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47781377	NES11997611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33301839					SNP	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781377	NES11997611	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110723883 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	within coordinates
Rr192781	regulatory region 192781	718 bp proximal
Rr205816	regulatory region 205816	917 bp proximal
Rr205817	regulatory region 205817	1317 bp proximal
Rr207403	regulatory region 207403	284 bp distal
Tssr87434	transcription start site region 87434	926 bp upstream
Tssr87435	transcription start site region 87435	955 bp upstream