rs33301843 SNP Detail

Summary

• ID
  rs33301843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110723931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGAGAT GGCCCAGGAG
  GAGGTGAAGC AGCATGCCCG GGAGCTTTGG GCTGCCTACA GGTGAGCCTG TGATGTCACA
  GGCTGATGAC CACAGCCTAG GGACTGGCCC AGGATAGCCC TTTCCAAGGC TTGGCTCTGT
  CCGATGCCTC TGACTCAAGT CTTGTTTGGT ACAGGATCAG AGCTTGGTCA GTGTGCCAAC
  R
  GTGGCCAGAG GTATCAGAGA TGACAGCAAG AGCTTCCGAT AGCTCCTGGC CAGGGGCCAA
  CCCCTGTTTG GTCCCTGGCA CACTCCTGAC CCTATAGAAA CCCTACCTTT GCTTTGGGCT
  GAGTGTGACC CTCAATTTCA AGCTCCGTCT ATCCTTTCCC AGGTAGAAGT TAGATCCCAT
  AAATATTACA GATAGGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47781381	NES11997613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33301843					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781381	NES11997613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110723931 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	within coordinates
Rr192781	regulatory region 192781	670 bp proximal
Rr205816	regulatory region 205816	869 bp proximal
Rr205817	regulatory region 205817	1269 bp proximal
Rr207403	regulatory region 207403	332 bp distal
Tssr87434	transcription start site region 87434	878 bp upstream
Tssr87435	transcription start site region 87435	907 bp upstream