rs33301875 SNP Detail

Summary

• ID
  rs33301875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110752878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATTCC AGCACTCAGG
  AGATCAGAAG TTCAAGGCCA TCTTCAACTA CATAACAAGC TCAGAGCTAG CCTAAGCTAC
  AAGACACTTT GCCTTTAACA GAGGGGGTAG TGGCAGGGGG GCAGGTGGCT CTTTCAAGCC
  TAAAGAGCTG AGTGCAGGGG TTCCACGTGG TGGGAGAACA GAACTGACTT CCGGAAGTTG
  Y
  TACAATGTAC ACTATGACAT GACCGTCTTC CCCAGTAAAT TAATTAATTA AACGTAATTT
  ATAAATTCCC AGAACTAGTC AATGAATTTA GCAAGGATGT AGGGCATATA AATGATTCCA
  AACCAACCCA TGCTAACAAT GAACAATCTG AAACTAAAGT TCAAATCTCA ATAGCATTAG
  CAATATATCC CCCCTCCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47781525	NES11996807	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33301875					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781525	NES11996807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110752878 () rs orientation: forward

Symbol	Name	Function Class
Gm55927	predicted gene, 55927	1593 bp upstream
Rr192784	regulatory region 192784	478 bp distal
Rr207411	regulatory region 207411	669 bp distal