rs33302047 SNP Detail

Summary

• ID
  rs33302047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:125120256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCAGGGC AAAGGCAGCA GCTGAAAAGA CCTAGCTGGG
  CGCCTGGGCC ATGCAGGCCC TCGGGGAGTG GCCGAAAGGC CACAAACTCA ACCGGATCAG
  R
  GTGGAGGGAC AGAGAGATTC CTTGGAGATT ATTTTTCTCT CAAACCCAGA GCAAGAGCAG
  GCTGGGCCCT GGGATGGCGA GGATGACTCT ACTAATTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45762151	mCV25274502	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149206876	ENSMUSSNP5314633	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321674177	CHEV_5_125523562	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33302047					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125120256 () rs orientation: forward

Symbol	Name	Function Class
Ncor2	nuclear receptor co-repressor 2	within coordinates
Tssr53394	transcription start site region 53394	374 bp upstream
Tssr53395	transcription start site region 53395	366 bp upstream
Tssr53396	transcription start site region 53396	142 bp upstream