rs33302184 SNP Detail

Summary

• ID
  rs33302184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164299795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CAAGTGCTAG GATTAAAGGT
  R
  TACACCACCA CCACTGCTTG GCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45262285	mCV24935630	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320605962	CHEV_2_164283375	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33302184					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164299795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397476	regulatory region 397476			749 bp downstream
Rr569623	regulatory region 569623			889 bp distal
Rr569624	regulatory region 569624			within coordinates
Rr569625	regulatory region 569625			668 bp distal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr21592	transcription start site region 21592			887 bp downstream