rs33302541 SNP Detail

Summary

• ID
  rs33302541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32394324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCTCTGAAT TTTACCCTGA AAATCTTAAT CCATAGCTAT TTCTTCTGAT GCTCCAATGG
  TTTTGTTTTT GGATTTGAGA GCCCCTTCAG GTGGCTCCTG GTTCCTTGGA CATGGGGCAG
  TCCCTTCCTT TTGTTTTTTT ATCTTTTTTT TTTTTTGTGC CACCACGCCC AGCGACAGGT
  AGCTTGCTTG CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTTTAAAGAT TTATTTATTT
  ATTATATGTA AGTACACTGT AGCTGTCTTC AGATACTCCA GAAGAGGGCG TTAGATCTTG
  K
  TTTTTTTTTT TTTTTTTTTT TTTTTTTAAA GATTTATTTA TTTATTATAT GTAAGTACAC
  TGTAGCTGTC TTCAGACACT CCAGAAGAGG GAGTCAGATC TTGTTACGGA TGGTTGTGAG
  CCACCATGTG GTTGCTGGGA TTTGAACTCC GGACCTTCGG AGGAGCAGTC GGGTGCTCTT
  ACCCACTGAA CCATCTCACC AGCCCTTGTT TTTTTTTTTA TCTTAATTCT GTGCATGCAC
  ATATACCATG GTTCATAGGA GGTCAGAGGA CAATGGTAGG TGTTGGTCCT TGCCTTCCTC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45261484	mCV25442143	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss146404355	ENSMUSSNP3570409	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33302541					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32394324 () rs orientation: forward

Symbol	Name	Function Class
Rr554940	regulatory region 554940	1073 bp distal
Rr554941	regulatory region 554941	1403 bp proximal