rs33302721 SNP Detail

Summary

• ID
  rs33302721
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCGCGGTGC AGCGGGAGGA GTGGGCGCAC AGCAGCGGGA CGGTTAGGCA CCTCGAGCCG
  GCGGCCGTTG GGCTCCATTG AGCATGCGCC AGGGGCGGGC CAGCCGTTAG TAGGTCGGCT
  TCCGGGGACG GTGATGGGAA TGGCGGCTCT CGGAGGCCCC ATGTGTACCG TGGTGGGATT
  GAGGGACCGG GCGGATCCAC ACTGCGTTTT CGGTCACGGC GAGAGGACTC AGGCTATCTG
  GGCAGACGTC CCGAGTCTGC AGTCACCGGC TTCCCGTCTT GTTCCGCCGC TCGCCCAGGA
  K
  ATTCTTCTCC AGACTCTGAT GCGGAAGGCC AGTGTCGCGC CTCTTAGGAA CGTGGCCATT
  CACTCGGCGT CGCTTTCCCG GTGTGAGGCC GGTTCAGCCC GTTGCCTCTG GTCTGCCTGG
  ACCTATAGTT GAAACTTTAG GTCTGTGACA GTCTGGGTTC ACTTGTTTCA TTTTCCTGGT
  TGAAGCAAGG CCTGACGTAT TGGGGGTGGG GGGCCATACG CTCCGAGTTG CGCCTCAACT
  AGTTCCCGGA ACCTTTTGTG TGCCTAGATT CTTGAGACAG GATCTCTTTA CATAATCCTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46260192	mCV23003778	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33302721					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			within coordinates
Ddx39a	DEAD box helicase 39a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1599 bp downstream
Rr401010	regulatory region 401010			431 bp downstream
Rr666291	regulatory region 666291			1158 bp distal
Rr666292	regulatory region 666292			148 bp distal
Rr666293	regulatory region 666293			within coordinates
Rr666294	regulatory region 666294			882 bp proximal
Tssr78284	transcription start site region 78284			502 bp downstream
Tssr78285	transcription start site region 78285			468 bp downstream
Tssr78286	transcription start site region 78286			418 bp downstream
Tssr78287	transcription start site region 78287			394 bp downstream
Tssr78288	transcription start site region 78288			182 bp downstream