rs33302887 SNP Detail

Summary

• ID
  rs33302887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110724343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG CCACATCACG CCCCTCTCAT
  Y
  GTCTTGCAGG GGTCTACTGA AGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47781385	NES11997615	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	T	C	C		C	C	C		C
ss136959941	ENSMUSSNP3916300	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss323194733	CHEV_9_110797779	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33302887					SNP	T	T	T	T	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781385	NES11997615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110724343 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	within coordinates
Rr192781	regulatory region 192781	258 bp proximal
Rr205816	regulatory region 205816	457 bp proximal
Rr205817	regulatory region 205817	857 bp proximal
Rr207403	regulatory region 207403	744 bp distal
Tssr87434	transcription start site region 87434	466 bp upstream
Tssr87435	transcription start site region 87435	495 bp upstream
Tssr87436	transcription start site region 87436	1673 bp upstream