rs33303217 SNP Detail

Summary

• ID
  rs33303217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90354908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCA GAAATAGAAC CATAAAGACA
  Y
  AGGCCATCAG CTGAGTCCCA CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45262206	mCV25136723	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146920000	ENSMUSSNP1361757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320390855	CHEV_2_90364721	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33303217					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90354908 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	1662 bp distal
Rr560520	regulatory region 560520	1842 bp proximal
Tssr25101	transcription start site region 25101	1447 bp upstream
Tssr25102	transcription start site region 25102	468 bp downstream