rs33305661 SNP Detail

Summary

• ID
  rs33305661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110765146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGCTGG ACTTGAGTGA
  CTCTTGCCCT GACCTTTTTC AAGCCCTCTA TAAGTCTGAT CCATATTCGA TTACCTTTGG
  ATAAGCAGCC CCTGCCTGGT GACTGAGCTA GACACAGCTA GTAAGCTGTC TGGATTACGC
  TAGCCTGTCT TCTGGAGTCT TCCAGGTCAT TCCCTGAAGA AAACTGAGAA CAGGAAAGAT
  Y
  CTTTGGCAGT ACTTTTGGGA AGATTATTTT GGGCCAGAGA CTTTGAGGTC TTTCCAGACA
  TTCCAAATGG AGCCTCTGAG GCCAGTCGTG TTAGCTCAAG CGTGTCTATG GGATCCCAGG
  GACACAGCTT GCCCATAAGG AGCCCTGTGG CCAGCCTGAC GCTGACTTTT TAGAGAAGGA
  GGTGGAGCAG AGGGACAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss47781581	NES11996355	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs33305661					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781581	NES11996355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110765146 () rs orientation: forward

Symbol	Name	Function Class
Rr192786	regulatory region 192786	1455 bp proximal
Rr202609	regulatory region 202609	within coordinates
Rr202610	regulatory region 202610	1520 bp proximal
Rr207412	regulatory region 207412	1147 bp distal
Rr207413	regulatory region 207413	1655 bp proximal