rs33305753 SNP Detail

Summary

• ID
  rs33305753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110973913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGTTC ATCTGTTGAC
  TAGACTTTAT TGGATGGCCA TTTATTGCCT AAGGAGGTAA TAGCCATTTA GACATCTAGG
  AGAACCAGAA GTTTGTGGCT CTTGATTATA GATTAACAGC CTGAGGAAAA GGTATGGAGA
  TGCGGTTTGG GCTTAGGTAA AAAGACATAT TCTAGCAGTG CTTTTTGGAG TGGATCCTTA
  Y
  GAGCTGGGCA GAGCTGATGG GAATACTGCT GCTCTGAGTA ATTGATTTAT TTTTAGTTCA
  CAGTAAATAG AAGATTAGAA AAACTTTTGG CAAGTACAAA AGGTTTCTTA AAATGTGGAT
  TACCAGAGCT GGAGAGATGG CTCAGTGGCT AGGAACACTG GCTGCTCTTC CAGAGGTCCT
  GAGTTCAGTT CCCAGCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47782435	NES11988071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C		T
ss323195906	CHEV_9_111047349	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33305753					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47782435	NES11988071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110973913 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687306	regulatory region 687306	1754 bp distal
Rr687307	regulatory region 687307	within coordinates
Tssr87483	transcription start site region 87483	1850 bp upstream