rs33305934 SNP Detail

Summary

• ID
  rs33305934
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCCTGG GCCAAAGCCT
  TGTCTGAGCC TCTTCCCCAA AACCCACCGC AGCCCATCTC GCGCGGGGCT GCAGCAAGAG
  GAGGGCGAGG GGTCTCGTCC CGCGCCGTCC GAGCCCGGGT GACCGCAGGT GGCGGCGACT
  CTGCAGTCGT GGCAGTTCAG AGTCCAGCAC CCGGCCCCAC GCGCGGGAAA GAAGCTCCAC
  S
  GGCACGCAGC GGGGGGACTG AGGGTGCGGA GCGGAGTGCT GGCCCGGCAG GGGAGGGCGA
  CGGCGCGGGG ACGTTACCTC CAACATGCCT CTCCTGCTCG CCCCGGCCGT GTCGATGAGT
  GTGTTGTCCA GGTCAAAGAA GACCGCGCGG ACCCGACTCA GCCCCATAGC CTCGGCAACC
  CAAGCAGCGC GCGAGCCGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45262137	mCV22554719	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss147953164	ENSMUSSNP7022869	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33305934					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881079 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	300 bp upstream
Cpgi12417	CpG island 12417	within coordinates
Nanp	N-acetylneuraminic acid phosphatase	within coordinates
Rr397387	regulatory region 397387	156 bp upstream
Rr567145	regulatory region 567145	1970 bp distal
Rr567146	regulatory region 567146	within coordinates
Rr567147	regulatory region 567147	229 bp proximal
Rr567148	regulatory region 567148	311 bp proximal
Tssr20713	transcription start site region 20713	342 bp upstream
Tssr26734	transcription start site region 26734	204 bp downstream