rs33306122 SNP Detail

Summary

• ID
  rs33306122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71146234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT CAGCTCAGGT CTGTCCTGGG
  R
  GGGGGGGGTT GCTCTGAGGG ACCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46260306	mCV22788420	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss145129698	ENSMUSSNP2027266	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33306122					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71146234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20484	CpG island 20484	1288 bp distal
Cpgi20485	CpG island 20485	1838 bp proximal
Gm39191	predicted gene, 39191	1229 bp upstream
Gm64207	predicted gene, 64207	1734 bp upstream
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	1958 bp upstream
Rr400910	regulatory region 400910	1695 bp upstream
Rr664886	regulatory region 664886	939 bp distal
Rr664887	regulatory region 664887	24 bp proximal
Rr664888	regulatory region 664888	1472 bp proximal