rs33306222 SNP Detail

Summary

• ID
  rs33306222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110837173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAAAAC CTTTAAAAGT
  TCTTACGTGC TTGGTATGCC TCTCCCTACT AAATGTAAAA GAAATCCCCC CAAATAAATA
  GTTTAAGAAA GTTTTGTAAA CAGCAACTTA ATAAAATTTA CCCTAATAAA GCTTTATCAT
  CTGGTTTCAA CAACAATCCA ATATCCACTG GGCAGCCCCA TGGCCTGAGC TCTGTTTTGG
  Y
  CCATTCACAT TTGCTTCATT AGAGCCTCCA GGTGCATAAG GAAAACATGC TAAGGCTCCC
  ATTTTCATGC AAGAAAGAAA AAATGCAGAA CGATTTGCCT AGACCTAGGA AATGGGTAAG
  AGGGAGAGAT ATTTTGAGTT TTAACTACTC CTGTCCCTGT TGCAGTATTT ATATATTTAG
  GAATATGTAT ATTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47781863	NES11993274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33306222					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781863	NES11993274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110837173 () rs orientation: forward

Symbol	Name	Function Class
1700061E17Rik	RIKEN cDNA 1700061E17 gene	33 bp downstream
Gm10030	predicted gene 10030	76 bp downstream
Tssr87455	transcription start site region 87455	1016 bp upstream