rs33307192 SNP Detail

Summary

• ID
  rs33307192
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGCTTC CCCCTCTGGT
  CCAGTTTCAA TCTATTTGTA ACCCTACCAG CTGTAAGAAC CCCCTAGACA GAAACTGCCT
  GTCAAGCATT GTTGCATTTA CTCTCAGCCA CTTTTAGAAT CCTTCTAGGA CACTGATGTT
  TAAGCTAATC TCCCCTTTCC ACTGGGATCC TAGATACTTG CTCATCTGAT GAGAGCAATA
  W
  ATCTGGATTT TAAAAACATT TCCAGATTTA ATATACAGCC AAGCTTAAAA ACCTTTCATT
  ATTTAGTGTT TCAGAGTGCT GGCCTGGACC ACGGCTCCTG ACTGCAGTTT CAGCATCACC
  ATCCAAACCT ATTGAATCCG AGAATCAGAG AATGAGCATT CCAGAGACCT CATACTGCTA
  CCTCAGTTTA GCTCAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45262724	mCV22628669	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33307192					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1172 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1489 bp distal
Rr564423	regulatory region 564423	1500 bp distal
Rr564424	regulatory region 564424	1352 bp distal
Rr564425	regulatory region 564425	851 bp distal
Sppl2a	signal peptide peptidase like 2A	1341 bp upstream
Tssr26085	transcription start site region 26085	1486 bp upstream
Tssr26086	transcription start site region 26086	1443 bp upstream
Tssr26087	transcription start site region 26087	1412 bp upstream
Tssr26088	transcription start site region 26088	1349 bp upstream
Tssr26089	transcription start site region 26089	1335 bp upstream
Tssr26090	transcription start site region 26090	696 bp upstream