rs33307854 SNP Detail

Summary

• ID
  rs33307854
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110846670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCCACT TTTGTGCGGG
  CAAACAGGAA GCCTGATTTG ACCTCATGTT TGTATCTCAT TAAGACTCTG CCCCAGGCAT
  GAGAGGCCTC ACAGGTTCAA GCTGGGCCTG CTCCTTAGGG CTGAGTGTCC CTTGGCAGTG
  CTGGCTTACT AGGGTACCTT CTGCTCCAGA AATATGTTCC TTATTGCCAG TGATTTAAGC
  K
  CTGTCCATGT CTGCCTCTGA AGAAAACACA GATTGCAATC ACAAGAGAAG GTTCCAGTGG
  CCGGCCTGAG GCTCCCTCAG GCTAACACCT CACTACTTCA TGTGTAAACT CTTGAGCTAA
  GTTTACATCT TGTACCGATA CGGTTACCAT ATTCTCTCTG CAGGCCCAAA CTGCCCCACT
  GTATGTATGG GCACCACACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss47781875	NES11992945	PERLEGEN	MM_PANEL2	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs33307854					SNP	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781875	NES11992945	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110846670 () rs orientation: forward

Symbol	Name	Function Class
Ltf	lactotransferrin	1690 bp upstream
Rr687278	regulatory region 687278	1430 bp proximal
Tssr87456	transcription start site region 87456	1682 bp upstream
Tssr91676	transcription start site region 91676	435 bp upstream