rs33307856 SNP Detail

Summary

• ID
  rs33307856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110849680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTCCATG TTTGCAACAT TAAGATCCAG TGTGCACATG
  AGTAAAACAT GAGCCACGCC ATTTCCCTGC TTCCCTGCCA GGTTCATCTA GGACAAGGCT
  R
  ATGGAGGTCA ATAAAATGAT CTTTGGAGTG GATCATCTTT GGGGGTGGGG TGGGTGTCTG
  AGTCTCATCC CTCTGTGGTC CAGCAGCTTA GCTTAACTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss47781877	NES11992903	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs33307856					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781877	NES11992903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110849680 () rs orientation: forward

Symbol	Name	Function Class
D9Mit38	DNA segment, Chr 9, Massachusetts Institute of Technology 38	834 bp proximal
Ltf	lactotransferrin	within coordinates
Rr687278	regulatory region 687278	1310 bp distal
Tssr87456	transcription start site region 87456	1314 bp downstream
Tssr87457	transcription start site region 87457	331 bp upstream
Tssr87458	transcription start site region 87458	1360 bp upstream
Tssr87459	transcription start site region 87459	1778 bp upstream