rs33307900 SNP Detail

Summary

• ID
  rs33307900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110812496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGA AGCTGTTGTC TTGAATAGGA
  R
  ATAGAGCCTC GGTCAATAAA GTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss47781783	NES11994287	PERLEGEN	MM_PANEL2	f	SNP	A					G	G	G
ss136961039	ENSMUSSNP5899038	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	A
ss323195251	CHEV_9_110885932	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33307900					SNP	A	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781783	NES11994287	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110812496 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198767	regulatory region 198767	705 bp proximal
Rr207418	regulatory region 207418	296 bp distal
Rr211513	regulatory region 211513	1776 bp proximal
Rtp3	receptor transporter protein 3	1507 bp downstream