rs33308304 SNP Detail

Summary

• ID
  rs33308304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129916605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGGCCGG CTGGCCTACT
  CCACAACCTG ACTGACCTTG ATTTTCACTG TCTCCTGCCT TAGCCTCTCA AGTAAACTGG
  ATTAGGGGCT TACTGGGGTC TGCTCTTGGG CTGTTTACTT AACCCTTCTC TGTTTTGTTT
  TGGGACAATG CCTCCGGTAA CGGATGTTGC CTTGGATCTC GCTGTTCTCA CGTCTCAGCC
  Y
  CCTAGTACTG GTCACGCAGG AAAAACTCTG TTTTTCTGTT ATAAAGAATT TACTAATAAA
  CGTGTTTGGA AATATTAAAT TACATAAGCA GAATTTCGCT AAAGGAGCTC TGCTCCCAAC
  ATGTCTGGAA GATAGTGAAC TAGCCGAGCT TATTAGAAAC TATGAAAAAG GGGCTGATGA
  GATGGCTCAG CGGAGAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45763585	mCV25038612	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss144477415	ENSMUSSNP4133064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321692417	CHEV_5_130363634	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33308304					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129916605 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	294 bp upstream
Cpgi16684	CpG island 16684	143 bp distal
Rr399383	regulatory region 399383	255 bp downstream
Rr621372	regulatory region 621372	305 bp distal
Rr621373	regulatory region 621373	within coordinates
Tssr53498	transcription start site region 53498	607 bp upstream
Tssr53499	transcription start site region 53499	459 bp upstream
Tssr53500	transcription start site region 53500	335 bp upstream
Tssr53501	transcription start site region 53501	284 bp upstream