rs33308412 SNP Detail

Summary

• ID
  rs33308412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCGGAGA CAGGACCCGG
  GAGAATACAT CTGGATAGAT GGTAGGGAGA GTCAGAATTG GGGAGGGGGA AGGCATGGTT
  GCGTGTTGGC ATGTGCTGTA TTTCAGGTGG CTGTGAGACA GCCACATGGA AACTTCACAG
  GGAGGCTTGA GAACACAGAC TGCAAGCTCA TAGGTGAGAG GTGGCCTTAG CAGACTCTCA
  R
  TCCTTGTATC TAGTTGGCAC ATTGGGGTAA TTGAACTCAG TGTGATCACC ATCATCTAGG
  GCGAGGGGAA GGTGACTTCT CTTTAACTGA GTTGTAAGGA GTTCCAGGTC AAGTTAGAGT
  TTTATCTTTG ACACCTTTTT TTTTGCTTTA TGTATTTGAT TTATATTATT CTGTACAAGT
  TGAGTTTGTC AGAGAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47782461	NES11987999	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	A		A
ss323195926	CHEV_9_111049432	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33308412					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47782461	NES11987999	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975996 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	1889 bp distal
Tssr87483	transcription start site region 87483	204 bp downstream
Tssr87484	transcription start site region 87484	1105 bp upstream