rs33310171 SNP Detail

Summary

• ID
  rs33310171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5900115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCTTCTGTC TCTGACCCGC TGGGGCCCTG CGGCAGCCTC ACTATCCGCT GGACTTTTCT
  CTCTTCGTCC CCTGACGCTG CAGCTCGGGT TGTAGGCGCT GCTGAGGTTC TGCCGGCACG
  CGCACCTCTC CCGGGGTTTC TGCGTTTACT CCCTTTTGGA GTTTTCCAGA GTGGTTCCTT
  TGTGCTGACT CAGCAGCATG TCTTACAGGC CATGTGATCG GCTGCTTTGC TTGAAATTTT
  TATTGCACTT CGTTGTTCCT GCTGGACTAG AGCCAAGCCT GAGTGTCCTG AAAGCACACT
  R
  GAACGCGAAG GAAGCAGAGC GTGAGTGCAC ACAAGCTGTG TACAGCTCAT CTTTGGGGAT
  GTTTGTGTGA GCATTTGGAT GAAACAAGAG TTACTGCCAA GCTTTCAAAA TTGTACATTG
  TGTGCATTTC CCAGCTTCCC AGTTGGTACT ACCTTTTTTT CTCACGGTCA CTAAATGCAT
  GGTGTTCTAC CCTTCCAACT AATTTTTAGA CATAAATATA GTATTTATAA ATTATTTAGA
  CATTACATTA TTCCATGAAA AGGCAGGACT CACAGGAGTC ATAGGAGTTC TGTGTTCTTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39520528	mCV23633527	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33310171					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5900115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8562	CpG island 8562	73 bp distal
E130303B20Rik	RIKEN cDNA E130303B20 gene	1201 bp upstream
Gm35474	predicted gene, 35474	1489 bp upstream
Rr521227	regulatory region 521227	within coordinates
Snx9	sorting nexin 9	within coordinates
Tssr142443	transcription start site region 142443	946 bp upstream