rs33310630 SNP Detail

Summary

• ID
  rs33310630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110830232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATAACA AGCAAATACC
  ATCAGTTATC ACAGTCAGCT AACATCACAG TAAAATAGTC ACACCAAATC AAATTATGGG
  TGGCTTCTTA AGATCCTACC AGTCCATCGC TGATCGCAGC ATACCTGCCC CTCCCGCCCT
  CCCTGCGTCT TTTTGAGGTT TTCACGCAGA CAGGCTGTCT CTAGTTCATT AATGGAATGG
  Y
  GCAGATTTCA CTAGTTCAGG CAGCAGGTGG CTTTTCTGCT ACCATAGCTT TCCTTTCAGC
  TTCAGGTTTC TTGGTTTCTG CAGCTTTTCC CCCTAAAGGT TTCTTCCCTT GACACCCAAT
  TCTCCACAGG CTTCTTGCTT GTAGCTCCCT TGTGTGCAAC CCCCTCATCT GATTTGGTTG
  GCTGCCTTCA TGTTCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47781813	NES11993498	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss323195315	CHEV_9_110903668	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33310630					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781813	NES11993498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110830232 () rs orientation: forward

Symbol	Name	Function Class
1700061E17Rik	RIKEN cDNA 1700061E17 gene	within coordinates
Gm10030	predicted gene 10030	within coordinates
Rr687273	regulatory region 687273	1403 bp distal
Rr687274	regulatory region 687274	1118 bp distal
Rr687275	regulatory region 687275	973 bp distal
Tssr91675	transcription start site region 91675	727 bp downstream