rs33311398 SNP Detail

Summary

• ID
  rs33311398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110830861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGTCAT GCACCCCAGG
  AGCGAGTTTC GAATGCTCGG CTTGCTTACA CAAAGCAGAG AATTACCAGG GAACGCCTCG
  GTGGTAGCAC TGTCTTTGTT ACAGATGGTG CAGGGCCCAG ACAGGATGGC AGGTTCTCAT
  TTTGTCCTCG ACAGCTCTCA TTCAGTGAGA GGCAGAGCCT TCTTGATGTC ATCTTAAGCA
  K
  CAGCACGATG CCTTTGGTCT TCTGTGACCT TCATCTTCAA CCACCAACGG CAGTTCGGCA
  AGTTCCTCAG TACGATGACC TTTAGATACG AGCAGAGCGG ATGAGGCAGG GACGGCCACA
  GCAGGTTTAT ATTTGCTCTG GGCTGTCAAG GTCTGCAGGC TTTTCTGAGC AGAAATATGC
  AGCCACCAAA GGCACCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47781821	NES11993504	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33311398					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781821	NES11993504	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110830861 () rs orientation: forward

Symbol	Name	Function Class
1700061E17Rik	RIKEN cDNA 1700061E17 gene	within coordinates
Gm10030	predicted gene 10030	within coordinates
Rr687274	regulatory region 687274	1747 bp distal
Rr687275	regulatory region 687275	1602 bp distal
Rr687276	regulatory region 687276	1636 bp proximal
Tssr91675	transcription start site region 91675	98 bp downstream